EnhancerDB
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  3. rs116326030[chr1:172879117]
Enhancers that have rs116326030[chr1:172879117]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 172860479 172890491 enh12377
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Blood (T-cell) Esophagus Astrocyte Lung (A549) Stomach Muscle (A673) Placenta Colon (HCT116) Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Thymus Epithelial (MCF-7)
chr1 172878579 172879356 vista3924
VISTA
Transcript factors that have rs116326030[chr1:172879117]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 172878746 172879190 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 107846247
chr1 172878835 172879339 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21350431
chr1 172878835 172879339 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107846248
chr1 172879027 172879491 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21350432
chr1 172879027 172879491 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 107846249
chr1 172879083 172879407 CEBPB UCSC Txn Factor no Conserved 107846250
chr1 172879083 172879407 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107846251
chr1 172879109 172879124 PRDM1 JASPAR yes 33164836
chr1 172879109 172879124 PRDM1 JASPAR yes 118400563
chr1 172879111 172879375 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21350433
chr1 172879111 172879375 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107846252
chr1 172879113 172879369 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21350434
chr1 172879113 172879369 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107846253
Genes associated with rs116326030[chr1:172879117], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More