EnhancerDB
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  3. rs116416353[chr1:25367002]
Enhancers that have rs116416353[chr1:25367002]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 25355194 25369035 enh149
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Blood (T-cell) Esophagus Astrocyte Blood (GM12878) Peripheral Blood (MM.1S) Blood (Karpas-422) Pancreas Thymus Stomach
Transcript factors that have rs116416353[chr1:25367002]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 25366989 25367004 RUNX2 JASPAR yes 27557168
chr1 25366997 25367007 ID4 JASPAR yes 27557169
chr1 25366997 25367007 TCF3 JASPAR yes 27557170
chr1 25366997 25367007 TCF4 JASPAR yes 27557171
chr1 25366998 25367007 SNAI2 JASPAR yes 27557172
chr1 25366999 25367004 USF2 TRANSFAC yes 27557173
Genes associated with rs116416353[chr1:25367002], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More