EnhancerDB
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  3. rs116652139[chr1:54052419]
Enhancers that have rs116652139[chr1:54052419]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 54045925 54059092 enh26707
Brain (SK-N-SH) Brain (SK-N-MC) Blood (T-cell) Astrocyte Peripheral Blood (MM.1S) Pancreas Muscle (Myotube) Uterus Thymus Stomach
Transcript factors that have rs116652139[chr1:54052419]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 54051058 54055279 ZNF274 GTRD no Bone Marrow (K562) 107804010
chr1 54051288 54055240 ZNF274 GTRD no Bone Marrow (K562) 107804011
chr1 54051504 54055886 ZNF274 GTRD no Bone Marrow (K562) 107804012
chr1 54051524 54054710 ZNF274 GTRD no Blood (GM12878) 107804013
chr1 54051609 54054952 ZNF274 GTRD no Liver (HepG2) 107804014
chr1 54051654 54054972 ZNF274 GTRD no Bone Marrow (K562) 107804015
chr1 54051686 54055847 ZNF274 GTRD no Bone Marrow (K562) 107804016
chr1 54051691 54053868 ZNF143 GTRD no Epithelial (MCF-7) 107804017
chr1 54051701 54055017 ZNF274 GTRD no Blood (GM12878) 107804018
chr1 54051717 54052971 ZNF274 GTRD no Liver (HepG2) 107804019
chr1 54051728 54054125 ZNF143 GTRD no Epithelial (MCF-7) 107804020
chr1 54051731 54054074 ZNF143 GTRD no Epithelial (MCF-7) 107804021
chr1 54051743 54053993 ZNF274 GTRD no Bone Marrow (K562) 107804022
chr1 54051767 54054138 ZNF274 GTRD no Liver (HepG2) 107804023
chr1 54051769 54054829 ZNF274 GTRD no Cervix (HeLa-S3) 107804024
chr1 54051770 54054117 ZNF274 GTRD no Cervix (HeLa-S3) 107804025
chr1 54051790 54052929 ZNF274 GTRD no Liver (HepG2) 107804026
chr1 54051794 54054885 ZNF274 GTRD no Blood (GM12878) 107804027
chr1 54051813 54054906 ZNF274 GTRD no Blood (GM12878) 107804028
chr1 54051818 54054947 ZNF274 GTRD no Bone Marrow (K562) 107804029
chr1 54051819 54053588 ZNF274 GTRD no Liver (HepG2) 107804030
chr1 54051842 54054813 ZNF274 GTRD no Liver (HepG2) 107804031
chr1 54051858 54054314 ZBTB33 GTRD no Lung (A549) 107804032
chr1 54051867 54054743 ZNF274 GTRD no Bone Marrow (K562) 107804033
chr1 54051872 54054070 ZNF274 GTRD no Blood (GM12878) 107804034
chr1 54051873 54054699 ZNF274 GTRD no Bone Marrow (K562) 107804035
chr1 54051877 54054827 ZNF143 GTRD no Epithelial (MCF-7) 107804036
chr1 54051884 54054752 ZNF274 GTRD no Bone Marrow (K562) 107804037
chr1 54051886 54054822 ZNF274 GTRD no Bone Marrow (K562) 107804038
chr1 54051900 54054836 ZNF274 GTRD no Bone Marrow (K562) 107804039
chr1 54051901 54055117 ZNF274 GTRD no Bone Marrow (K562) 107804040
chr1 54051906 54053936 ZNF274 GTRD no Cervix (HeLa-S3) 107804041
chr1 54051923 54054232 ZNF274 GTRD no Liver (HepG2) 107804042
chr1 54051930 54054973 ZNF274 GTRD no Bone Marrow (K562) 107804043
chr1 54051946 54054856 ZNF274 GTRD no Bone Marrow (K562) 107804044
chr1 54051977 54054190 ZNF274 GTRD no Cervix (HeLa-S3) 107804045
chr1 54051977 54054869 ZNF274 GTRD no Bone Marrow (K562) 107804046
chr1 54051981 54054199 ZNF274 GTRD no Bone Marrow (K562) 107804047
chr1 54052012 54053998 ZBTB33 GTRD no Brain (SK-N-SH) 107804048
chr1 54052024 54054978 STAT3 GTRD no Blood (OCI-LY7) 107804049
chr1 54052030 54054031 ZNF274 GTRD no Blood (GM12878) 107804050
chr1 54052049 54053977 ZNF274 GTRD no Liver (HepG2) 107804051
chr1 54052068 54054058 ZNF274 GTRD no Bone Marrow (K562) 107804052
chr1 54052073 54054649 ZNF274 GTRD no Blood (GM12878) 107804053
chr1 54052073 54054680 ZNF143 GTRD no Epithelial (MCF-7) 107804054
chr1 54052075 54054192 ZNF274 GTRD no Bone Marrow (K562) 107804055
chr1 54052108 54053853 ZNF274 GTRD no Cervix (HeLa-S3) 107804056
chr1 54052117 54054252 ZNF274 GTRD no Blood (GM12878) 107804057
chr1 54052151 54054234 ZBTB33 GTRD no Brain (SK-N-SH) 107804058
chr1 54052162 54054170 ZNF274 GTRD no Bone Marrow (K562) 107804059
chr1 54052174 54054252 ZNF274 GTRD no Cervix (HeLa-S3) 107804060
chr1 54052184 54054274 ZNF274 GTRD no Blood (GM12878) 107804061
chr1 54052187 54054180 ZNF274 GTRD no Cervix (HeLa-S3) 107804062
chr1 54052191 54053889 ZBTB33 GTRD no Lung (A549) 107804063
chr1 54052195 54054340 ZNF274 GTRD no Blood (GM12878) 107804064
chr1 54052196 54054415 ZNF274 GTRD no Cervix (HeLa-S3) 107804065
chr1 54052199 54052965 ZBTB33 GTRD no Lung (A549) 107804066
chr1 54052203 54054242 ZNF274 GTRD no Bone Marrow (K562) 107804067
chr1 54052204 54053974 ZNF274 GTRD no Blood (GM12878) 107804068
chr1 54052205 54054057 ZBTB33 GTRD no Brain (SK-N-SH) 107804069
chr1 54052210 54055120 ZNF274 GTRD no Bone Marrow (K562) 107804070
chr1 54052212 54054215 ZNF274 GTRD no Cervix (HeLa-S3) 107804071
chr1 54052219 54053947 ZNF274 GTRD no Liver (HepG2) 107804072
chr1 54052219 54054241 ZNF274 GTRD no Liver (HepG2) 107804073
chr1 54052220 54054223 ZBTB33 GTRD no Lung (A549) 107804074
chr1 54052220 54054304 ZNF274 GTRD no Cervix (HeLa-S3) 107804075
chr1 54052221 54054224 ZNF274 GTRD no Bone Marrow (K562) 107804076
chr1 54052227 54053496 ZNF274 GTRD no Blood (GM12878) 107804077
chr1 54052238 54054132 ZNF274 GTRD no Liver (HepG2) 107804078
chr1 54052243 54054322 ZNF274 GTRD no Blood (GM12878) 107804079
chr1 54052245 54054026 ZBTB33 GTRD no Lung (A549) 107804080
chr1 54052247 54054436 ZNF274 GTRD no Cervix (HeLa-S3) 107804081
chr1 54052253 54054978 ZNF274 GTRD no Bone Marrow (K562) 107804082
chr1 54052254 54054731 ZBTB33 GTRD no Brain (SK-N-SH) 107804083
chr1 54052261 54053942 ZBTB33 GTRD no Brain (SK-N-SH) 107804084
chr1 54052263 54054199 TCF7L2 GTRD no Colon (HCT116) 107804085
chr1 54052265 54054641 ZBTB33 GTRD no Brain (SK-N-SH) 107804086
chr1 54052267 54052900 ZBTB33 GTRD no Lung (A549) 107804087
chr1 54052268 54054198 ZNF274 GTRD no Bone Marrow (K562) 107804088
chr1 54052279 54054759 ZNF274 GTRD no Bone Marrow (K562) 107804089
chr1 54052286 54054926 ZNF274 GTRD no Bone Marrow (K562) 107804090
chr1 54052293 54054455 ZNF274 GTRD no Liver (HepG2) 107804091
chr1 54052307 54054052 ZNF274 GTRD no Liver (HepG2) 107804092
chr1 54052308 54054124 ZNF274 GTRD no Liver (HepG2) 107804093
chr1 54052312 54054174 ZBTB33 GTRD no Lung (A549) 107804094
chr1 54052318 54055023 ZNF274 GTRD no Bone Marrow (K562) 107804095
chr1 54052322 54054104 ZNF274 GTRD no Liver (HepG2) 107804096
chr1 54052332 54054114 ZNF274 GTRD no Liver (HepG2) 107804097
chr1 54052357 54054480 ZNF143 GTRD no Epithelial (MCF-7) 107804098
chr1 54052368 54053582 ZNF274 GTRD no Blood (GM12878) 107804099
chr1 54052369 54054231 ZNF274 GTRD no Bone Marrow (K562) 107804100
chr1 54052383 54053857 ZNF274 GTRD no Blood (GM12878) 107804101
chr1 54052386 54054006 ZBTB33 GTRD no Lung (A549) 107804102
chr1 54052395 54053962 ZNF274 GTRD no Liver (HepG2) 107804103
chr1 54052399 54054300 ZBTB33 GTRD no Lung (A549) 107804104
chr1 54052405 54054132 ZNF274 GTRD no Blood (GM12878) 107804105
chr1 54052410 54052427 ESR1 JASPAR yes 28940186
Genes associated with rs116652139[chr1:54052419], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More