EnhancerDB
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  3. rs116672880[chr1:3472668]
Enhancers that have rs116672880[chr1:3472668]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 3448190 3482098 enh11432
Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-MC) Prostate (RWPE1) Brain (SK-N-SH) Esophagus Astrocyte Stomach Placenta Colon (HCT116) Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Muscle (Myotube) Uterus Thymus Heart
Transcript factors that have rs116672880[chr1:3472668]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 3472665 3472680 SCRT1 JASPAR yes 26295666
chr1 3472666 3472676 FIGLA JASPAR yes 26295667
chr1 3472666 3472676 MSC JASPAR yes 26295668
chr1 3472667 3472676 SNAI2 JASPAR yes 26295669
chr1 3472668 3472673 USF2 TRANSFAC yes 26295670
Genes associated with rs116672880[chr1:3472668], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More