EnhancerDB
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  3. rs116877620[chr17:70364462]
Enhancers that have rs116877620[chr17:70364462]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 70352230 70433435 enh4580
Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs116877620[chr17:70364462]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 70363656 70364471 P63 GTRD no Skin (Keratinocyte) 21784295
chr17 70363727 70364557 P63 GTRD no Skin (Keratinocyte) 21784296
chr17 70364447 70364462 FOXP1 JASPAR yes 55778674
chr17 70364447 70364468 IRF1 JASPAR yes 55778675
chr17 70364448 70364463 FOXP1 JASPAR yes 55778676
chr17 70364448 70364469 IRF1 JASPAR yes 55778677
chr17 70364449 70364464 FOXP1 JASPAR yes 55778678
chr17 70364449 70364470 IRF1 JASPAR yes 55778679
chr17 70364450 70364465 FOXP1 JASPAR yes 55778680
chr17 70364450 70364471 IRF1 JASPAR yes 55778681
chr17 70364451 70364466 FOXP1 JASPAR yes 55778682
chr17 70364451 70364472 IRF1 JASPAR yes 55778683
chr17 70364452 70364467 FOXP1 JASPAR yes 55778684
chr17 70364453 70364468 FOXP1 JASPAR yes 55778685
chr17 70364453 70364474 IRF1 JASPAR yes 55778686
chr17 70364454 70364469 FOXP1 JASPAR yes 55778687
chr17 70364454 70364475 IRF1 JASPAR yes 55778688
chr17 70364455 70364470 FOXP1 JASPAR yes 55778689
chr17 70364458 70364473 STAT2 JASPAR yes 55778690
Genes associated with rs116877620[chr17:70364462], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More