EnhancerDB
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  3. rs117004990[chr1:230216651]
Enhancers that have rs117004990[chr1:230216651]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 230203175 230225395 enh12769
Astrocyte Colon (HCT116) Pancreas Stomach Epithelial (MCF-7) Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs117004990[chr1:230216651]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 230216636 230216651 RFX5 JASPAR yes 36019222
chr1 230216647 230216659 PKNOX1 JASPAR yes 36019223
chr1 230216647 230216659 PKNOX2 JASPAR yes 36019224
chr1 230216647 230216659 TGIF1 JASPAR yes 36019225
chr1 230216647 230216659 TGIF2 JASPAR yes 36019226
Genes associated with rs117004990[chr1:230216651], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More