EnhancerDB
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  3. rs117517400[chr16:1772440]
Enhancers that have rs117517400[chr16:1772440]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 1759265 1774552 enh3842
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs117517400[chr16:1772440]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 1772432 1772443 SPDEF JASPAR yes 9158859
chr16 1772439 1772450 E2F6 JASPAR yes 9158861
chr16 1772440 1772445 SP1 TRANSFAC yes 9158862
Genes associated with rs117517400[chr16:1772440], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More