EnhancerDB
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  3. rs117856680[chr1:202054021]
Enhancers that have rs117856680[chr1:202054021]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 202022729 202063855 enh12534
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Pancreas Epithelial (MCF-7) Stomach Brain (SK-N-SH) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs117856680[chr1:202054021]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 202053815 202054151 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21366701
chr1 202053815 202054151 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107857720
chr1 202053840 202054084 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21366702
chr1 202053850 202054160 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21366703
chr1 202053850 202054160 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 107857721
chr1 202053862 202054062 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21366704
chr1 202053897 202054213 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21366705
chr1 202053897 202054213 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107857722
chr1 202053906 202054290 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21366706
chr1 202053906 202054290 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 107857723
chr1 202054009 202054030 ZNF263 JASPAR yes 34551468
chr1 202054012 202054468 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21366707
chr1 202054012 202054468 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107857724
chr1 202054013 202054025 HINFP JASPAR yes 34551469
chr1 202054018 202054308 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21366708
chr1 202054018 202054308 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107857725
chr1 202054021 202054026 SP1 TRANSFAC yes 34551470
Genes associated with rs117856680[chr1:202054021], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More