EnhancerDB
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  3. rs117896338[chr1:205445127]
Enhancers that have rs117896338[chr1:205445127]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 205444631 205456855 enh61954
Prostate (PC-3) Cervix (HeLa-S3) Esophagus Stomach Muscle (A673) Colon (HCT116) Breast Peripheral Blood (MM.1S) Lung (PC-9) Pancreas Pancreas (Panc1) Neural Stem Cells (H9) Blood (T-cell) Epithelial (MCF-7)
Transcript factors that have rs117896338[chr1:205445127]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 205443087 205445846 ZNF143 GTRD no Epithelial (MCF-7) 21371863
chr1 205444623 205445311 SOX2 GTRD no Neural Stem Cells (H9) 21371866
chr1 205444671 205445361 SOX2 GTRD no Neural Stem Cells (H9) 21371867
chr1 205444681 205445369 SOX2 GTRD no Neural Stem Cells (H9) 21371868
chr1 205444690 205445320 SOX2 GTRD no Neural Stem Cells (H9) 21371869
chr1 205444722 205445809 ZNF143 GTRD no Epithelial (MCF-7) 21371870
chr1 205444731 205445254 SOX2 GTRD no Neural Stem Cells (H9) 21371871
chr1 205444758 205445131 SOX2 GTRD no Neural Stem Cells (H9) 21371872
chr1 205444761 205445469 TCF7L2 GTRD no Colon (HCT116) 21371873
chr1 205444795 205445786 ZNF143 GTRD no Epithelial (MCF-7) 21371874
chr1 205445107 205445128 IRF1 JASPAR yes 34762583
chr1 205445119 205445131 ZBTB7B JASPAR yes 34762585
chr1 205445119 205445131 ZBTB7C JASPAR yes 34762586
Genes associated with rs117896338[chr1:205445127], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More