EnhancerDB
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  3. rs12061198[chr1:42357040]
Enhancers that have rs12061198[chr1:42357040]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 42354446 42370305 enh11796
Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Blood (T-cell) Astrocyte Bone (Osteoblast) Stomach Placenta Colon (HCT116) Peripheral Blood (MM.1S) Muscle (Myoblast) Pancreas Spleen Muscle (Myotube) Thymus Heart
chr1 42356899 42357259 vista1367
VISTA
Transcript factors that have rs12061198[chr1:42357040]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 42357030 42357042 IRF1 JASPAR yes 28434346
chr1 42357030 42357042 IRF1 JASPAR yes 118280636
chr1 42357039 42357049 ALX3 JASPAR yes 28434347
chr1 42357039 42357049 GSX2 JASPAR yes 28434348
chr1 42357039 42357049 MIXL1 JASPAR yes 28434349
chr1 42357039 42357049 MNX1 JASPAR yes 28434350
chr1 42357039 42357049 ALX3 JASPAR yes 118280637
chr1 42357039 42357049 GSX2 JASPAR yes 118280638
chr1 42357039 42357049 MIXL1 JASPAR yes 118280639
chr1 42357039 42357049 MNX1 JASPAR yes 118280640
chr1 42357040 42357048 ISX JASPAR yes 28434351
chr1 42357040 42357048 LHX9 JASPAR yes 28434352
chr1 42357040 42357048 LMX1B JASPAR yes 28434353
chr1 42357040 42357048 PRRX1 JASPAR yes 28434354
chr1 42357040 42357048 RAX2 JASPAR yes 28434355
chr1 42357040 42357048 SHOX JASPAR yes 28434356
chr1 42357040 42357048 UNCX JASPAR yes 28434357
chr1 42357040 42357048 ISX JASPAR yes 118280641
chr1 42357040 42357048 LHX9 JASPAR yes 118280642
chr1 42357040 42357048 LMX1B JASPAR yes 118280643
chr1 42357040 42357048 PRRX1 JASPAR yes 118280644
chr1 42357040 42357048 RAX2 JASPAR yes 118280645
chr1 42357040 42357048 SHOX JASPAR yes 118280646
chr1 42357040 42357048 UNCX JASPAR yes 118280647
Genes associated with rs12061198[chr1:42357040], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More