EnhancerDB
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  3. rs12080427[chr1:203293332]
Enhancers that have rs12080427[chr1:203293332]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 203277525 203300170 enh883
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Cervix (HeLa-S3) Large Intestine Blood (GM12878) Placenta Lung (PC-9) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
chr1 203293246 203293605 vista4630
VISTA
Transcript factors that have rs12080427[chr1:203293332]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 203293171 203293555 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21368605
chr1 203293171 203293555 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107858677
chr1 203293245 203293509 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21368606
chr1 203293245 203293509 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107858678
chr1 203293318 203293332 TCF7L2 JASPAR yes 34617764
chr1 203293318 203293332 TCF7L2 JASPAR yes 118435492
Genes associated with rs12080427[chr1:203293332], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More