EnhancerDB
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  3. rs12080429[chr1:205445080]
Enhancers that have rs12080429[chr1:205445080]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 205444631 205456855 enh61954
Prostate (PC-3) Cervix (HeLa-S3) Esophagus Stomach Muscle (A673) Colon (HCT116) Breast Peripheral Blood (MM.1S) Lung (PC-9) Pancreas Pancreas (Panc1) Neural Stem Cells (H9) Blood (T-cell) Epithelial (MCF-7)
Transcript factors that have rs12080429[chr1:205445080]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 205443087 205445846 ZNF143 GTRD no Epithelial (MCF-7) 21371863
chr1 205443424 205445091 ZNF143 GTRD no Epithelial (MCF-7) 21371864
chr1 205444623 205445311 SOX2 GTRD no Neural Stem Cells (H9) 21371866
chr1 205444671 205445361 SOX2 GTRD no Neural Stem Cells (H9) 21371867
chr1 205444681 205445369 SOX2 GTRD no Neural Stem Cells (H9) 21371868
chr1 205444690 205445320 SOX2 GTRD no Neural Stem Cells (H9) 21371869
chr1 205444722 205445809 ZNF143 GTRD no Epithelial (MCF-7) 21371870
chr1 205444731 205445254 SOX2 GTRD no Neural Stem Cells (H9) 21371871
chr1 205444758 205445131 SOX2 GTRD no Neural Stem Cells (H9) 21371872
chr1 205444761 205445469 TCF7L2 GTRD no Colon (HCT116) 21371873
chr1 205444795 205445786 ZNF143 GTRD no Epithelial (MCF-7) 21371874
chr1 205445072 205445086 FOXF2 JASPAR yes 34762568
chr1 205445074 205445085 FOXB1 JASPAR yes 34762569
chr1 205445074 205445085 FOXC1 JASPAR yes 34762570
chr1 205445074 205445086 FOXC2 JASPAR yes 34762571
chr1 205445075 205445087 FOXI1 JASPAR yes 34762572
chr1 205445078 205445093 MEF2A JASPAR yes 34762573
chr1 205445080 205445092 MEF2A JASPAR yes 34762574
chr1 205445080 205445092 MEF2B JASPAR yes 34762575
chr1 205445080 205445092 MEF2D JASPAR yes 34762576
Genes associated with rs12080429[chr1:205445080], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More