EnhancerDB
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  3. rs12088946[chr1:28464178]
Enhancers that have rs12088946[chr1:28464178]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 28446825 28468055 enh182
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Bone (Osteoblast) Blood (OCI-LY7) Placenta Colon (HCT116) Thyroid Blood (Karpas-422) Lung (PC-9) Stomach
Transcript factors that have rs12088946[chr1:28464178]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 28464171 28464180 SOX9 JASPAR yes 27745457
chr1 28464171 28464192 IRF1 JASPAR yes 27745458
chr1 28464177 28464198 IRF1 JASPAR yes 27745459
Genes associated with rs12088946[chr1:28464178], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More