EnhancerDB
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  3. rs12090051[chr1:212422266]
Enhancers that have rs12090051[chr1:212422266]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 212396705 212423635 enh12640
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Bone (Osteoblast) Lung (A549) Thyroid Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Heart
Transcript factors that have rs12090051[chr1:212422266]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 212422126 212422492 TCF7L2 GTRD no Colon (HCT116) 21378523
chr1 212422245 212422266 IRF1 JASPAR yes 35115108
chr1 212422249 212422270 IRF1 JASPAR yes 35115113
chr1 212422251 212422266 FOXP1 JASPAR yes 35115115
Genes associated with rs12090051[chr1:212422266], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More