EnhancerDB
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  3. rs12116426[chr1:221996648]
Enhancers that have rs12116426[chr1:221996648]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 221995465 222021667 enh12697
Liver Astrocyte Colon (HCT116) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Peripheral Blood (MM.1S) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Heart
Transcript factors that have rs12116426[chr1:221996648]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 221996395 221996779 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21382787
chr1 221996412 221997008 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21382788
chr1 221996482 221996718 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21382789
chr1 221996515 221996795 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21382790
chr1 221996516 221996836 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21382791
chr1 221996536 221996866 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21382792
chr1 221996639 221996653 IRF8 JASPAR yes 35571547
chr1 221996639 221996654 IRF9 JASPAR yes 35571548
Genes associated with rs12116426[chr1:221996648], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More