EnhancerDB
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  3. rs12120488[chr1:205456128]
Enhancers that have rs12120488[chr1:205456128]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 205444631 205456855 enh61954
Prostate (PC-3) Cervix (HeLa-S3) Esophagus Stomach Muscle (A673) Colon (HCT116) Breast Peripheral Blood (MM.1S) Lung (PC-9) Pancreas Pancreas (Panc1) Neural Stem Cells (H9) Blood (T-cell) Epithelial (MCF-7)
Transcript factors that have rs12120488[chr1:205456128]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 205454880 205457852 TCF7L2 GTRD no Colon (HCT116) 21371953
chr1 205455330 205457969 TCF7L2 GTRD no Colon (HCT116) 21371959
chr1 205455489 205457709 TCF7L2 GTRD no Colon (HCT116) 21371960
chr1 205455500 205457642 TCF7L2 GTRD no Colon (HCT116) 21371961
chr1 205455544 205457759 TCF7L2 GTRD no Colon (HCT116) 21371962
chr1 205455874 205456503 TCF7L2 GTRD no Colon (HCT116) 21371963
chr1 205455882 205457874 TCF7L2 GTRD no Colon (HCT116) 21371964
chr1 205455939 205457259 TCF7L2 GTRD no Colon (HCT116) 21371965
chr1 205456019 205457406 ZNF143 GTRD no Epithelial (MCF-7) 21371966
chr1 205456032 205457565 ZNF143 GTRD no Epithelial (MCF-7) 21371967
chr1 205456055 205457770 TCF7L2 GTRD no Colon (HCT116) 21371968
chr1 205456121 205456134 SMAD2 JASPAR yes 34764239
chr1 205456124 205456134 TBR1 JASPAR yes 34764240
chr1 205456125 205456135 TBX21 JASPAR yes 34764241
chr1 205456126 205456134 MGA JASPAR yes 34764242
chr1 205456126 205456134 TBX15 JASPAR yes 34764243
chr1 205456126 205456134 TBX1 JASPAR yes 34764244
chr1 205456126 205456134 TBX4 JASPAR yes 34764245
chr1 205456126 205456134 TBX5 JASPAR yes 34764246
chr1 205456126 205456135 ZEB1 JASPAR yes 34764247
chr1 205456126 205456138 PKNOX1 JASPAR yes 34764248
chr1 205456126 205456138 TGIF1 JASPAR yes 34764249
chr1 205456126 205456141 SCRT1 JASPAR yes 34764250
chr1 205456127 205456137 FIGLA JASPAR yes 34764251
chr1 205456127 205456137 ID4 JASPAR yes 34764252
chr1 205456127 205456137 TCF3 JASPAR yes 34764253
chr1 205456127 205456137 TCF4 JASPAR yes 34764254
chr1 205456128 205456137 SNAI2 JASPAR yes 34764255
Genes associated with rs12120488[chr1:205456128], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More