EnhancerDB
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  3. rs12123568[chr1:19803460]
Enhancers that have rs12123568[chr1:19803460]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19801145 19810806 enh11569
Bone Marrow (K562) Brain (SK-N-SH) Blood (T-cell) Astrocyte Blood (OCI-LY7) Stomach Placenta Thyroid Embryonic Stem Cell Line (H1-hESC) Thymus Heart
chr1 19803336 19803680 vista618
VISTA
Transcript factors that have rs12123568[chr1:19803460]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19803249 19803633 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107802307
chr1 19803446 19804153 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107802308
chr1 19803452 19803468 RFX3 JASPAR yes 27195926
chr1 19803452 19803468 RFX4 JASPAR yes 27195927
chr1 19803452 19803468 RFX3 JASPAR yes 118243578
chr1 19803452 19803468 RFX4 JASPAR yes 118243579
chr1 19803453 19803472 RFX2 JASPAR yes 27195928
chr1 19803453 19803472 RFX2 JASPAR yes 118243580
chr1 19803455 19803470 RFX5 JASPAR yes 27195929
chr1 19803455 19803470 RFX5 JASPAR yes 118243581
chr1 19803460 19803472 PKNOX2 JASPAR yes 27195930
chr1 19803460 19803472 TGIF2 JASPAR yes 27195931
chr1 19803460 19803472 PKNOX2 JASPAR yes 118243582
chr1 19803460 19803472 TGIF2 JASPAR yes 118243583
Genes associated with rs12123568[chr1:19803460], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More