EnhancerDB
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  3. rs12129580[chr1:54954271]
Enhancers that have rs12129580[chr1:54954271]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 54937905 54958655 enh11871
Bone Marrow (K562) Brain (SK-N-SH) Brain (SK-N-MC) Prostate (RWPE1) Blood (T-cell) Esophagus Muscle (A673) Placenta Pancreas (Panc1) Uterus Thymus
chr1 54953784 54954325 vista1663
VISTA
Transcript factors that have rs12129580[chr1:54954271]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 54953754 54954370 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107805127
chr1 54953758 54954442 E2F1 UCSC Txn Factor no Conserved 107805129
chr1 54953786 54954442 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 107805135
chr1 54953794 54954404 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107805139
chr1 54953830 54954294 MAZ UCSC Txn Factor no Conserved 107805145
chr1 54953830 54954294 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107805146
chr1 54953832 54954411 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107805148
chr1 54953838 54954274 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107805149
chr1 54953870 54954374 TCF7L2 UCSC Txn Factor no Conserved 107805159
chr1 54953870 54954374 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107805160
chr1 54953885 54954285 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107805169
chr1 54953897 54954287 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107805174
chr1 54953902 54954278 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107805176
chr1 54953903 54954379 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107805178
chr1 54953907 54954483 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107805180
chr1 54953907 54954483 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107805181
chr1 54953908 54954278 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107805183
chr1 54953913 54954283 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107805186
chr1 54953917 54954273 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107805189
chr1 54953919 54954299 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107805191
chr1 54953921 54954361 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 107805192
chr1 54953922 54954358 ELF1 UCSC Txn Factor no Conserved 107805193
chr1 54953922 54954358 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107805194
chr1 54953931 54954271 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107805197
chr1 54953931 54954451 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107805198
chr1 54953938 54954278 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107805200
chr1 54953940 54954396 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107805201
chr1 54953943 54954333 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107805204
chr1 54953946 54954282 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107805206
chr1 54953946 54954330 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107805207
chr1 54953958 54954334 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107805213
chr1 54953964 54954324 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107805214
chr1 54953969 54954309 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107805218
chr1 54953974 54954324 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107805219
chr1 54953975 54954318 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107805220
chr1 54953977 54954293 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107805222
chr1 54953978 54954334 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 107805224
chr1 54953980 54954324 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107805225
chr1 54953981 54954311 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107805226
chr1 54953983 54954283 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107805228
chr1 54953987 54954443 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107805232
chr1 54953992 54954316 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107805234
chr1 54954000 54954384 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 107805237
chr1 54954001 54954377 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107805238
chr1 54954003 54954359 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107805240
chr1 54954007 54954347 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107805243
chr1 54954016 54954286 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 107805246
chr1 54954020 54954303 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107805247
chr1 54954020 54954330 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 107805248
chr1 54954023 54954317 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107805249
chr1 54954027 54954337 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 107805250
chr1 54954040 54954304 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107805253
chr1 54954046 54954275 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107805256
chr1 54954052 54954276 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107805258
chr1 54954059 54954315 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107805261
chr1 54954076 54954297 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107805265
chr1 54954083 54954283 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107805266
chr1 54954085 54954309 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107805268
chr1 54954088 54954308 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107805269
chr1 54954089 54954279 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 107805270
chr1 54954096 54954316 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 107805271
chr1 54954143 54954403 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107805272
Genes associated with rs12129580[chr1:54954271], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More