EnhancerDB
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  3. rs12142280[chr1:172864652]
Enhancers that have rs12142280[chr1:172864652]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 172860479 172890491 enh12377
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Blood (T-cell) Esophagus Astrocyte Lung (A549) Stomach Muscle (A673) Placenta Colon (HCT116) Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Thymus Epithelial (MCF-7)
Transcript factors that have rs12142280[chr1:172864652]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 172864358 172864839 ZNF143 GTRD no Epithelial (MCF-7) 21350373
chr1 172864639 172864653 SPI1 JASPAR yes 33162457
chr1 172864642 172864660 SRF JASPAR yes 33162458
chr1 172864646 172864666 RREB1 JASPAR yes 33162459
chr1 172864648 172864652 YY1 TRANSFAC yes 33162460
Genes associated with rs12142280[chr1:172864652], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More