EnhancerDB
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Enhancers that have rs12239564[chr1:118203508]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 118194385 118210705 enh589
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Blood (T-cell) Esophagus Blood (OCI-LY7) Blood (GM12878) Stomach Peripheral Blood (MM.1S) Blood (Karpas-422) Lung (PC-9) Pancreas Pancreas (Panc1) Thymus Epithelial (MCF-7)
Transcript factors that have rs12239564[chr1:118203508]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 118203236 118203636 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21334710
chr1 118203236 118203636 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107825408
chr1 118203280 118203556 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21334711
chr1 118203500 118203511 FOSL2 JASPAR yes 31890580
Genes associated with rs12239564[chr1:118203508], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 117117031 117210375 - IGSF3 ENSG00000143061.13 117210375 993133 Esophagus 0.260668 1062