EnhancerDB
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  3. rs12240271[chr1:230207462]
Enhancers that have rs12240271[chr1:230207462]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 230203175 230225395 enh12769
Astrocyte Colon (HCT116) Pancreas Stomach Epithelial (MCF-7) Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs12240271[chr1:230207462]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 230207452 230207462 NKX2-3 JASPAR yes 36018053
chr1 230207453 230207462 NKX2-8 JASPAR yes 36018054
Genes associated with rs12240271[chr1:230207462], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More