EnhancerDB
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  3. rs12260394[chr10:99042601]
Enhancers that have rs12260394[chr10:99042601]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr10 99032725 99042855 enh1454
Brain (SK-N-MC) Colon (HCT116) Blood (Karpas-422) Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs12260394[chr10:99042601]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr10 99042584 99042605 IRF1 JASPAR yes 129387483
chr10 99042585 99042606 IRF1 JASPAR yes 129387484
chr10 99042586 99042601 FOXP1 JASPAR yes 129387485
chr10 99042586 99042607 IRF1 JASPAR yes 129387486
chr10 99042590 99042611 IRF1 JASPAR yes 129387487
chr10 99042591 99042606 FOXP1 JASPAR yes 129387488
chr10 99042591 99042612 IRF1 JASPAR yes 129387489
chr10 99042592 99042613 IRF1 JASPAR yes 129387490
chr10 99042593 99042608 FOXP1 JASPAR yes 129387491
chr10 99042593 99042614 IRF1 JASPAR yes 129387492
chr10 99042594 99042615 IRF1 JASPAR yes 129387493
chr10 99042595 99042610 FOXP1 JASPAR yes 129387494
chr10 99042595 99042616 IRF1 JASPAR yes 129387495
chr10 99042596 99042611 FOXP1 JASPAR yes 129387496
chr10 99042596 99042617 IRF1 JASPAR yes 129387497
chr10 99042597 99042612 FOXP1 JASPAR yes 129387498
chr10 99042598 99042613 FOXP1 JASPAR yes 129387499
chr10 99042599 99042614 FOXP1 JASPAR yes 129387500
chr10 99042600 99042615 FOXP1 JASPAR yes 129387501
chr10 99042601 99042616 FOXP1 JASPAR yes 129387502
Genes associated with rs12260394[chr10:99042601], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More