EnhancerDB
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  3. rs12402278[chr1:229071227]
Enhancers that have rs12402278[chr1:229071227]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 229064405 229076635 enh47305
Liver (HepG2) Large Intestine Blood (T-cell) Liver Stomach Thyroid Pancreas Spleen Uterus Thymus Heart
Transcript factors that have rs12402278[chr1:229071227]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 229070846 229071390 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21389310
chr1 229070856 229071472 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21389311
chr1 229070950 229071240 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21389312
chr1 229070952 229071332 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21389313
chr1 229070957 229071227 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21389314
chr1 229070974 229071274 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21389315
chr1 229070988 229071328 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21389316
chr1 229070993 229071292 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21389317
chr1 229071007 229071297 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21389319
chr1 229071027 229071397 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21389321
chr1 229071045 229071382 ZNF274 GTRD no Liver (HepG2) 21389323
chr1 229071070 229071346 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21389324
chr1 229071074 229071339 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21389325
chr1 229071090 229071426 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21389326
chr1 229071169 229071389 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21389327
chr1 229071188 229071464 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21389328
chr1 229071227 229071242 TFAP2A JASPAR yes 35944525
Genes associated with rs12402278[chr1:229071227], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 228270361 228286912 + ARF1 ENSG00000143761.9 228270361 784315 Thyroid 0.0449589 1912