EnhancerDB
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  3. rs12409738[chr1:29291143]
Enhancers that have rs12409738[chr1:29291143]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 29289305 29304099 enh26594
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Large Intestine Esophagus Astrocyte Liver Bone (Osteoblast) Muscle (A673) Colon (HCT116) Adrenal Lung (PC-9) Muscle (Myoblast) Uterus Blood (T-cell) Epithelial (MCF-7)
Transcript factors that have rs12409738[chr1:29291143]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 29291128 29291143 FOXA1 JASPAR yes 27794279
chr1 29291136 29291150 ONECUT2 JASPAR yes 27794285
chr1 29291136 29291150 ONECUT3 JASPAR yes 27794286
chr1 29291136 29291151 FOXP1 JASPAR yes 27794287
chr1 29291137 29291152 FOXA1 JASPAR yes 27794288
chr1 29291138 29291149 FOXB1 JASPAR yes 27794289
chr1 29291138 29291149 FOXC1 JASPAR yes 27794290
chr1 29291138 29291150 FOXC2 JASPAR yes 27794291
chr1 29291139 29291151 FOXI1 JASPAR yes 27794292
chr1 29291140 29291154 ONECUT2 JASPAR yes 27794293
chr1 29291140 29291154 ONECUT3 JASPAR yes 27794294
chr1 29291140 29291155 FOXP1 JASPAR yes 27794295
chr1 29291140 29291155 HNF1A JASPAR yes 27794296
chr1 29291141 29291155 POU4F1 JASPAR yes 27794297
chr1 29291141 29291156 FOXA1 JASPAR yes 27794298
chr1 29291141 29291157 POU4F2 JASPAR yes 27794299
chr1 29291141 29291157 POU4F3 JASPAR yes 27794300
chr1 29291142 29291153 FOXB1 JASPAR yes 27794301
chr1 29291142 29291153 FOXC1 JASPAR yes 27794302
chr1 29291142 29291153 PROP1 JASPAR yes 27794303
chr1 29291142 29291154 FOXC2 JASPAR yes 27794304
chr1 29291143 29291155 FOXI1 JASPAR yes 27794305
Genes associated with rs12409738[chr1:29291143], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More