EnhancerDB
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  3. rs12564488[chr1:221904340]
Enhancers that have rs12564488[chr1:221904340]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 221879328 221909475 enh12696
Bone Marrow (K562) Astrocyte Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Lung (A549) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Lung Heart
Transcript factors that have rs12564488[chr1:221904340]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 221903715 221904611 TCF7L2 GTRD no Colon (HCT116) 107871875
chr1 221904327 221904343 POU4F2 JASPAR yes 35563201
chr1 221904327 221904343 POU4F3 JASPAR yes 35563202
chr1 221904329 221904343 POU4F1 JASPAR yes 35563203
chr1 221904333 221904349 SOX8 JASPAR yes 35563207
chr1 221904334 221904347 POU3F3 JASPAR yes 35563208
chr1 221904335 221904348 POU2F2 JASPAR yes 35563209
chr1 221904338 221904353 MEF2A JASPAR yes 35563210
chr1 221904339 221904354 MEF2C JASPAR yes 35563211
chr1 221904340 221904352 MEF2A JASPAR yes 35563212
Genes associated with rs12564488[chr1:221904340], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More