EnhancerDB
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  3. rs12728717[chr1:40299948]
Enhancers that have rs12728717[chr1:40299948]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 40278465 40303035 enh11766
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Blood (T-cell) Bone (Osteoblast) Blood (OCI-LY7) Stomach Placenta Colon (HCT116) Peripheral Blood (MM.1S) Lung (PC-9) Thymus Epithelial (MCF-7)
Transcript factors that have rs12728717[chr1:40299948]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 40299937 40299952 FOXP1 JASPAR yes 28295119
chr1 40299938 40299949 FOXP2 JASPAR yes 28295120
chr1 40299938 40299950 FOXC2 JASPAR yes 28295121
chr1 40299938 40299952 FOXF2 JASPAR yes 28295122
chr1 40299944 40299949 GATA2 JASPAR yes 28295125
chr1 40299945 40299951 ZNF354C JASPAR yes 28295126
Genes associated with rs12728717[chr1:40299948], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More