EnhancerDB
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  3. rs12820090[chr12:65928304]
Enhancers that have rs12820090[chr12:65928304]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 65910512 65934055 enh14789
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Placenta Colon (HCT116) Pancreas (Panc1) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Uterus
Transcript factors that have rs12820090[chr12:65928304]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 65927923 65928578 ZNF274 GTRD no Liver (HepG2) 108042011
chr12 65927926 65928653 ZNF274 GTRD no Liver (HepG2) 108042012
chr12 65927963 65928724 ZBTB33 GTRD no Brain (SK-N-SH) 108042013
chr12 65927987 65928639 ZBTB33 GTRD no Brain (SK-N-SH) 108042014
chr12 65927998 65928961 ZBTB33 GTRD no Brain (SK-N-SH) 108042015
chr12 65928007 65928754 ZNF274 GTRD no Liver (HepG2) 108042016
chr12 65928016 65928644 ZBTB33 GTRD no Brain (SK-N-SH) 108042017
chr12 65928022 65928671 ZBTB33 GTRD no Lung (A549) 108042018
chr12 65928025 65928741 ZBTB33 GTRD no Brain (SK-N-SH) 108042019
chr12 65928041 65928656 ZBTB33 GTRD no Brain (SK-N-SH) 108042020
chr12 65928059 65928488 ZBTB33 GTRD no Lung (A549) 108042021
chr12 65928061 65928504 ZBTB33 GTRD no Lung (A549) 108042022
chr12 65928063 65928533 ZBTB33 GTRD no Lung (A549) 108042023
chr12 65928072 65928724 ZBTB33 GTRD no Brain (SK-N-SH) 108042024
chr12 65928074 65928616 ZBTB33 GTRD no Brain (SK-N-SH) 108042025
chr12 65928085 65928661 ZBTB33 GTRD no Brain (SK-N-SH) 108042026
chr12 65928103 65928604 ZBTB33 GTRD no Lung (A549) 108042027
chr12 65928104 65928517 ZNF274 GTRD no Liver (HepG2) 108042028
chr12 65928106 65928483 ZNF274 GTRD no Liver (HepG2) 108042029
chr12 65928108 65928510 ZNF274 GTRD no Blood (GM12878) 108042030
chr12 65928110 65928683 ZBTB33 GTRD no Brain (SK-N-SH) 108042031
chr12 65928111 65928502 ZBTB33 GTRD no Brain (SK-N-SH) 108042032
chr12 65928128 65928529 TCF7L2 GTRD no Colon (HCT116) 21553024
chr12 65928128 65928529 TCF7L2 GTRD no Colon (HCT116) 108042033
chr12 65928129 65928494 ZNF274 GTRD no Liver (HepG2) 108042034
chr12 65928135 65928530 ZBTB33 GTRD no Lung (A549) 108042035
chr12 65928180 65928546 ZBTB33 GTRD no Brain (SK-N-SH) 108042036
chr12 65928214 65928492 ZNF143 GTRD no Epithelial (MCF-7) 108042037
chr12 65928218 65928514 ZBTB33 GTRD no Brain (SK-N-SH) 108042038
chr12 65928271 65928454 ZBTB33 GTRD no Lung (A549) 108042039
chr12 65928281 65928547 ZBTB33 GTRD no Lung (A549) 108042040
chr12 65928300 65928305 TFAP2A TRANSFAC yes 121468070
chr12 65928300 65928306 MZF1 JASPAR yes 121468071
chr12 65928303 65928324 ZNF263 JASPAR yes 121468072
Genes associated with rs12820090[chr12:65928304], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More