EnhancerDB
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  3. rs1286225[chr1:115712666]
Enhancers that have rs1286225[chr1:115712666]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 115706465 115714135 enh12174
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Astrocyte Muscle (A673) Placenta Colon (HCT116) Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Uterus Epithelial (MCF-7)
Transcript factors that have rs1286225[chr1:115712666]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 115709561 115715466 ZNF143 GTRD no Epithelial (MCF-7) 21330708
chr1 115709561 115715466 ZNF143 GTRD no Epithelial (MCF-7) 107823458
chr1 115709561 115715466 ZNF143 GTRD no Epithelial (MCF-7) 107823459
chr1 115710368 115716823 ZNF143 GTRD no Epithelial (MCF-7) 21330713
chr1 115710368 115716823 ZNF143 GTRD no Epithelial (MCF-7) 107823460
chr1 115710539 115716662 ZNF143 GTRD no Epithelial (MCF-7) 21330715
chr1 115710539 115716662 ZNF143 GTRD no Epithelial (MCF-7) 107823461
chr1 115712079 115712739 P63 GTRD no Skin (Keratinocyte) 21330764
chr1 115712130 115712791 P63 GTRD no Skin (Keratinocyte) 21330765
chr1 115712402 115715626 ZNF143 GTRD no Epithelial (MCF-7) 21330766
chr1 115712402 115715626 ZNF143 GTRD no Epithelial (MCF-7) 107823462
chr1 115712498 115715521 ZNF143 GTRD no Epithelial (MCF-7) 21330767
chr1 115712498 115715521 ZNF143 GTRD no Epithelial (MCF-7) 107823463
chr1 115712532 115715548 ZNF143 GTRD no Epithelial (MCF-7) 21330768
chr1 115712532 115715548 ZNF143 GTRD no Epithelial (MCF-7) 107823464
chr1 115712558 115716504 ZNF143 GTRD no Epithelial (MCF-7) 21330769
chr1 115712558 115716504 ZNF143 GTRD no Epithelial (MCF-7) 107823465
chr1 115712562 115716711 ZNF143 GTRD no Epithelial (MCF-7) 21330770
chr1 115712562 115716711 ZNF143 GTRD no Epithelial (MCF-7) 107823466
chr1 115712633 115715514 ZNF143 GTRD no Epithelial (MCF-7) 21330771
chr1 115712633 115715514 ZNF143 GTRD no Epithelial (MCF-7) 107823467
chr1 115712659 115712669 HOXC10 JASPAR yes 31713784
chr1 115712659 115712669 HOXD11 JASPAR yes 31713785
chr1 115712659 115712670 HOXC11 JASPAR yes 31713786
chr1 115712659 115712670 HOXC12 JASPAR yes 31713787
Genes associated with rs1286225[chr1:115712666], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 115259534 115301297 - CSDE1 ENSG00000009307.11 115301297 411369 Thyroid 0.0741789 1048