EnhancerDB
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  3. rs12936732[chr17:55690000]
Enhancers that have rs12936732[chr17:55690000]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 55673238 55692440 enh4492
Colon (HCT116) Adrenal Blood (Karpas-422) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Ovary Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Breast Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs12936732[chr17:55690000]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 55689750 55690927 TEF1 GTRD no Bone (Osteoblast) 108274213
chr17 55689760 55690616 ZBTB33 GTRD no Brain (SK-N-SH) 108274214
chr17 55689812 55690687 ZBTB33 GTRD no Brain (SK-N-SH) 108274215
chr17 55689818 55690609 ZBTB33 GTRD no Brain (SK-N-SH) 108274216
chr17 55689842 55690833 ZBTB33 GTRD no Brain (SK-N-SH) 108274217
chr17 55689857 55690649 ZBTB33 GTRD no Brain (SK-N-SH) 108274218
chr17 55689873 55690565 ZBTB33 GTRD no Brain (SK-N-SH) 108274219
chr17 55689883 55690569 ZNF143 GTRD no Epithelial (MCF-7) 21773654
chr17 55689883 55690569 ZNF143 GTRD no Epithelial (MCF-7) 108274220
chr17 55689888 55690604 ZBTB33 GTRD no Brain (SK-N-SH) 108274221
chr17 55689958 55690687 ZBTB33 GTRD no Brain (SK-N-SH) 108274222
chr17 55689980 55690001 REST JASPAR yes 54975399
chr17 55689981 55690000 REST JASPAR yes 54975400
chr17 55689994 55690330 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21773655
chr17 55689994 55690330 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108274223
chr17 55689999 55690404 ZBTB33 GTRD no Brain (SK-N-SH) 108274224
chr17 55690000 55690488 ZBTB33 GTRD no Brain (SK-N-SH) 108274225
Genes associated with rs12936732[chr17:55690000], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More