EnhancerDB
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  3. rs12940467[chr17:76932517]
Enhancers that have rs12940467[chr17:76932517]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 76924065 76939144 enh17419
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs12940467[chr17:76932517]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 76931463 76933661 TCF7L2 GTRD no Colon (HCT116) 21795410
chr17 76932171 76933233 TCF7L2 GTRD no Colon (HCT116) 21795421
chr17 76932268 76933584 TCF7L2 GTRD no Colon (HCT116) 21795424
chr17 76932275 76933649 TCF7L2 GTRD no Colon (HCT116) 21795425
chr17 76932317 76933286 TCF7L2 GTRD no Colon (HCT116) 21795426
chr17 76932368 76932987 TCF7L2 GTRD no Colon (HCT116) 21795427
chr17 76932398 76932939 TCF7L2 GTRD no Colon (HCT116) 21795428
chr17 76932485 76932927 ZNF143 GTRD no Epithelial (MCF-7) 21795429
chr17 76932501 76932522 IRF1 JASPAR yes 56190509
chr17 76932502 76932517 FOXP1 JASPAR yes 56190510
chr17 76932502 76932523 IRF1 JASPAR yes 56190511
chr17 76932503 76932518 FOXP1 JASPAR yes 56190512
chr17 76932503 76932524 IRF1 JASPAR yes 56190513
chr17 76932504 76932519 FOXP1 JASPAR yes 56190514
chr17 76932504 76932525 IRF1 JASPAR yes 56190515
chr17 76932505 76932520 FOXP1 JASPAR yes 56190516
chr17 76932507 76932522 FOXP1 JASPAR yes 56190517
chr17 76932508 76932523 STAT2 JASPAR yes 56190518
chr17 76932509 76932524 FOXP1 JASPAR yes 56190519
chr17 76932510 76932531 IRF1 JASPAR yes 56190520
chr17 76932511 76932523 FOXC2 JASPAR yes 56190521
chr17 76932512 76932523 FOXP2 JASPAR yes 56190522
Genes associated with rs12940467[chr17:76932517], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More