EnhancerDB
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  3. rs12949179[chr17:40517720]
Enhancers that have rs12949179[chr17:40517720]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 40510425 40522535 enh17159
Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-MC) Large Intestine Liver Astrocyte Bone (Osteoblast) Lung (A549) Stomach Placenta Thyroid Muscle (Myotube) Neural Stem Cells (H9) Blood (T-cell) Heart
Transcript factors that have rs12949179[chr17:40517720]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 40513077 40520281 ZBTB33 GTRD no Lung (A549) 21758607
chr17 40513077 40520281 ZBTB33 GTRD no Lung (A549) 108260425
chr17 40516182 40520263 ZBTB33 GTRD no Lung (A549) 21758608
chr17 40516182 40520263 ZBTB33 GTRD no Lung (A549) 108260426
chr17 40516222 40517739 ZBTB33 GTRD no Lung (A549) 21758610
chr17 40516222 40517739 ZBTB33 GTRD no Lung (A549) 108260428
chr17 40516225 40517812 ZNF274 GTRD no Bone Marrow (K562) 108260429
chr17 40516250 40523339 ZNF274 GTRD no Cervix (HeLa-S3) 21758611
chr17 40516250 40523339 ZNF274 GTRD no Cervix (HeLa-S3) 108260430
chr17 40516257 40520245 ZBTB33 GTRD no Lung (A549) 21758612
chr17 40516257 40520245 ZBTB33 GTRD no Lung (A549) 108260431
chr17 40516274 40517747 ZBTB33 GTRD no Lung (A549) 21758613
chr17 40516274 40517747 ZBTB33 GTRD no Lung (A549) 108260433
chr17 40516318 40517849 ZNF274 GTRD no Blood (GM12878) 108260436
chr17 40516326 40517860 ZBTB33 GTRD no Lung (A549) 21758615
chr17 40516326 40517860 ZBTB33 GTRD no Lung (A549) 108260437
chr17 40516327 40517859 ZNF274 GTRD no Bone Marrow (K562) 108260438
chr17 40516328 40517881 ZBTB33 GTRD no Lung (A549) 21758616
chr17 40516328 40517881 ZBTB33 GTRD no Lung (A549) 108260439
chr17 40516335 40517802 ZNF274 GTRD no Bone Marrow (K562) 108260440
chr17 40516339 40520134 ZBTB33 GTRD no Lung (A549) 21758618
chr17 40516339 40520134 ZBTB33 GTRD no Lung (A549) 108260442
chr17 40516344 40518115 TCF7L2 GTRD no Colon (HCT116) 108260443
chr17 40516345 40517781 ZBTB33 GTRD no Lung (A549) 21758620
chr17 40516345 40517781 ZBTB33 GTRD no Lung (A549) 108260446
chr17 40516345 40517887 ZBTB33 GTRD no Lung (A549) 21758621
chr17 40516345 40517887 ZBTB33 GTRD no Lung (A549) 108260447
chr17 40516381 40517740 ZNF274 GTRD no Blood (GM12878) 108260455
chr17 40516398 40520314 ZBTB33 GTRD no Lung (A549) 21758624
chr17 40516398 40520314 ZBTB33 GTRD no Lung (A549) 108260458
chr17 40516405 40517767 ZNF274 GTRD no Cervix (HeLa-S3) 21758625
chr17 40516405 40517767 ZNF274 GTRD no Cervix (HeLa-S3) 108260460
chr17 40516414 40517751 ZNF274 GTRD no Bone Marrow (K562) 108260463
chr17 40516420 40524798 ZBTB33 GTRD no Lung (A549) 21758628
chr17 40516420 40524798 ZBTB33 GTRD no Lung (A549) 108260464
chr17 40516478 40517777 ZNF274 GTRD no Bone Marrow (K562) 108260487
chr17 40516489 40517780 ZNF274 GTRD no Blood (GM12878) 108260490
chr17 40516519 40517739 ZNF274 GTRD no Cervix (HeLa-S3) 21758639
chr17 40516519 40517739 ZNF274 GTRD no Cervix (HeLa-S3) 108260500
chr17 40516562 40517752 ZNF274 GTRD no Bone Marrow (K562) 108260516
chr17 40516645 40517732 ZNF274 GTRD no Bone Marrow (K562) 108260542
chr17 40516645 40517899 ZNF274 GTRD no Bone Marrow (K562) 108260543
chr17 40517115 40517896 ZNF274 GTRD no Bone Marrow (K562) 108260588
Genes associated with rs12949179[chr17:40517720], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr17 40819932 40829048 - PLEKHH3 ENSG00000068137.10 40829048 302212 Thyroid 0.267984 15871