EnhancerDB
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  3. rs12949480[chr17:27477038]
Enhancers that have rs12949480[chr17:27477038]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 27463605 27492255 enh4319
Bone Marrow (K562) Brain (SK-N-MC) Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs12949480[chr17:27477038]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 27477028 27477042 NR2F1 JASPAR yes 53717782
chr17 27477028 27477042 RXRG JASPAR yes 53717783
chr17 27477032 27477042 RORA JASPAR yes 53717784
chr17 27477037 27477041 ESR1 TRANSFAC yes 53717785
Genes associated with rs12949480[chr17:27477038], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More