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- rs12952380[chr17:1621413]
Enhancers that have rs12952380[chr17:1621413]
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| Chrom. |
Start |
End |
Enhancer ID |
Tissues that enhancer appears |
More |
| chr17 |
1621105 |
1630375 |
enh4200 |
|
|
Transcript factors that have rs12952380[chr17:1621413]
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| Chrom. |
Start |
End |
TF name |
Source |
Predicted site? |
Tissue |
id |
More |
|
chr17
|
1617757
|
1621453
|
POLR2A
|
UCSC Txn Factor
|
no
|
Conserved
|
108228951
|
|
|
chr17
|
1619629
|
1621453
|
ZZZ3
|
ENCODE Uniform TFBS
|
no
|
Blood (GM12878)
|
21739320
|
|
|
chr17
|
1619629
|
1621453
|
ZZZ3
|
ENCODE Uniform TFBS
|
no
|
Blood (GM12878)
|
108228952
|
|
|
chr17
|
1620096
|
1621498
|
ZNF143
|
GTRD
|
no
|
Epithelial (MCF-7)
|
108228956
|
|
|
chr17
|
1620179
|
1621433
|
ZNF143
|
GTRD
|
no
|
Epithelial (MCF-7)
|
108228959
|
|
|
chr17
|
1620188
|
1621425
|
ZNF143
|
GTRD
|
no
|
Epithelial (MCF-7)
|
108228963
|
|
|
chr17
|
1620344
|
1621941
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
21739322
|
|
|
chr17
|
1620344
|
1621941
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
108228977
|
|
|
chr17
|
1620389
|
1622194
|
ZNF143
|
GTRD
|
no
|
Epithelial (MCF-7)
|
108228982
|
|
|
chr17
|
1620455
|
1621797
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
21739323
|
|
|
chr17
|
1620455
|
1621797
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
108228992
|
|
|
chr17
|
1620515
|
1621859
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
21739325
|
|
|
chr17
|
1620515
|
1621859
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
108228998
|
|
|
chr17
|
1620669
|
1621877
|
ZNF274
|
GTRD
|
no
|
Liver (HepG2)
|
21739328
|
|
|
chr17
|
1620669
|
1621877
|
ZNF274
|
GTRD
|
no
|
Liver (HepG2)
|
108229019
|
|
|
chr17
|
1620790
|
1621641
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
21739337
|
|
|
chr17
|
1620790
|
1621641
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
108229079
|
|
|
chr17
|
1620860
|
1621520
|
ZZZ3
|
ENCODE Uniform TFBS
|
no
|
Blood (GM12878)
|
21739339
|
|
|
chr17
|
1620860
|
1621520
|
ZZZ3
|
ENCODE Uniform TFBS
|
no
|
Blood (GM12878)
|
108229096
|
|
|
chr17
|
1620884
|
1622323
|
ZNF274
|
GTRD
|
no
|
Liver (HepG2)
|
21739340
|
|
|
chr17
|
1620884
|
1622323
|
ZNF274
|
GTRD
|
no
|
Liver (HepG2)
|
108229098
|
|
|
chr17
|
1621398
|
1621414
|
POU4F2
|
JASPAR
|
yes
|
|
52696977
|
|
|
chr17
|
1621399
|
1621414
|
FOXA1
|
JASPAR
|
yes
|
|
52696978
|
|
|
chr17
|
1621400
|
1621415
|
FOXP1
|
JASPAR
|
yes
|
|
52696980
|
|
|
chr17
|
1621401
|
1621413
|
FOXC2
|
JASPAR
|
yes
|
|
52696981
|
|
|
chr17
|
1621401
|
1621415
|
ONECUT2
|
JASPAR
|
yes
|
|
52696982
|
|
|
chr17
|
1621401
|
1621415
|
ONECUT3
|
JASPAR
|
yes
|
|
52696983
|
|
|
chr17
|
1621402
|
1621413
|
FOXB1
|
JASPAR
|
yes
|
|
52696984
|
|
|
chr17
|
1621402
|
1621413
|
FOXC1
|
JASPAR
|
yes
|
|
52696985
|
|
|
chr17
|
1621404
|
1621419
|
FOXP1
|
JASPAR
|
yes
|
|
52696987
|
|
|
chr17
|
1621404
|
1621425
|
IRF1
|
JASPAR
|
yes
|
|
52696988
|
|
|
chr17
|
1621405
|
1621417
|
FOXC2
|
JASPAR
|
yes
|
|
52696989
|
|
|
chr17
|
1621406
|
1621427
|
IRF1
|
JASPAR
|
yes
|
|
52696990
|
|
|
chr17
|
1621408
|
1621423
|
FOXP1
|
JASPAR
|
yes
|
|
52696992
|
|
|
chr17
|
1621409
|
1621424
|
FOXP1
|
JASPAR
|
yes
|
|
52696993
|
|
|
chr17
|
1621410
|
1621425
|
FOXP1
|
JASPAR
|
yes
|
|
52696994
|
|
|
chr17
|
1621411
|
1621426
|
FOXP1
|
JASPAR
|
yes
|
|
52696995
|
|
|
chr17
|
1621412
|
1621427
|
FOXP1
|
JASPAR
|
yes
|
|
52696996
|
|
Genes associated with rs12952380[chr17:1621413], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
| Chrom. |
Start |
End |
Strand |
Gene name |
Ensembl ID |
TSS of gene |
Distance between TSS and SNP |
Tissue |
q Value |
id |
More |