EnhancerDB
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  3. rs12979240[chr19:4812362]
Enhancers that have rs12979240[chr19:4812362]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 4796225 4815632 enh17875
Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Prostate (RWPE1) Ovary Esophagus Astrocyte Lung (PC-9) Bone (Osteoblast) Blood (OCI-LY7) Stomach Muscle (A673) Placenta Colon (HCT116) Pancreas (Panc1) Muscle (Myoblast) Pancreas Spleen Uterus Heart
Transcript factors that have rs12979240[chr19:4812362]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 4810975 4813607 TCF7L2 GTRD no Colon (HCT116) 21842252
chr19 4810975 4813607 TCF7L2 GTRD no Colon (HCT116) 108373065
chr19 4811219 4812404 ZNF143 GTRD no Epithelial (MCF-7) 21842253
chr19 4811269 4812407 ZNF274 GTRD no Cervix (HeLa-S3) 21842254
chr19 4811308 4812419 TCF7L2 GTRD no Colon (HCT116) 21842255
chr19 4811485 4812362 ZNF274 GTRD no Cervix (HeLa-S3) 21842260
chr19 4811511 4812392 ZNF274 GTRD no Cervix (HeLa-S3) 21842264
chr19 4811546 4812375 TCF7L2 GTRD no Colon (HCT116) 21842271
chr19 4811662 4812455 TCF7L2 GTRD no Colon (HCT116) 21842277
chr19 4811851 4812367 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21842293
chr19 4811866 4812396 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21842294
chr19 4812356 4812365 SP1 TRANSFAC yes 112192563
chr19 4812357 4812365 SP1 TRANSFAC yes 112192564
chr19 4812357 4812367 SP1 JASPAR yes 112192565
Genes associated with rs12979240[chr19:4812362], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More