EnhancerDB
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  3. rs1353040[chr1:228979354]
Enhancers that have rs1353040[chr1:228979354]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 228960005 228980255 enh12752
Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Kidney Large Intestine Prostate (RWPE1) Esophagus Astrocyte Liver Cervix (HeLa-S3) Stomach Placenta Colon (HCT116) Breast Thyroid Pancreas Pancreas (Panc1) Muscle (Myotube) Uterus Heart
Transcript factors that have rs1353040[chr1:228979354]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 228978848 228979631 TCF7L2 GTRD no Colon (HCT116) 21388964
chr1 228979118 228979561 TCF7L2 GTRD no Colon (HCT116) 21388965
chr1 228979209 228979655 TCF7L2 GTRD no Colon (HCT116) 21388966
chr1 228979353 228979374 REST JASPAR yes 35934971
Genes associated with rs1353040[chr1:228979354], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More