EnhancerDB
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Enhancers that have rs138178802[chr12:54611954]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 54604917 54618893 enh2376
Bone Marrow (K562) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Ovary Blood (T-cell) Astrocyte Lung (PC-9) Bone (Osteoblast) Blood (GM12878) Placenta Colon (HCT116) Blood (Karpas-422) Muscle (Myoblast) Pancreas Pancreas (Panc1) Neural Stem Cells (H9) Thymus
chr12 54611719 54612027 vista13567
VISTA
Transcript factors that have rs138178802[chr12:54611954]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 54611352 54611988 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108037105
chr12 54611477 54611997 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108037108
chr12 54611561 54612231 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108037110
chr12 54611619 54611995 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108037113
chr12 54611639 54611959 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21550420
chr12 54611639 54611959 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108037116
chr12 54611716 54611972 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108037120
chr12 54611733 54612118 ZNF143 GTRD no Epithelial (MCF-7) 108037122
chr12 54611735 54612059 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108037123
chr12 54611951 54611963 HNF1B JASPAR yes 82411928
chr12 54611951 54611963 HNF1B JASPAR yes 121029543
Genes associated with rs138178802[chr12:54611954], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More