EnhancerDB
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  3. rs138941673[chr17:53529487]
Enhancers that have rs138941673[chr17:53529487]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 53505736 53535115 enh4475
Brain (SK-N-MC) Liver Colon (HCT116) Blood (Karpas-422) Pancreas Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs138941673[chr17:53529487]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 53529385 53529829 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21772696
chr17 53529466 53529487 IRF1 JASPAR yes 54852833
chr17 53529467 53529488 IRF1 JASPAR yes 54852835
chr17 53529468 53529489 IRF1 JASPAR yes 54852837
chr17 53529469 53529490 IRF1 JASPAR yes 54852839
chr17 53529470 53529491 IRF1 JASPAR yes 54852841
chr17 53529472 53529487 FOXP1 JASPAR yes 54852843
chr17 53529474 53529495 IRF1 JASPAR yes 54852844
chr17 53529475 53529496 IRF1 JASPAR yes 54852845
chr17 53529478 53529492 SPIC JASPAR yes 54852846
chr17 53529479 53529493 STAT1 JASPAR yes 54852847
chr17 53529479 53529494 STAT2 JASPAR yes 54852848
chr17 53529483 53529488 ETS2 TRANSFAC yes 54852849
Genes associated with rs138941673[chr17:53529487], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More