EnhancerDB
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  3. rs139230530[chr17:53508482]
Enhancers that have rs139230530[chr17:53508482]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 53505736 53535115 enh4475
Brain (SK-N-MC) Liver Colon (HCT116) Blood (Karpas-422) Pancreas Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs139230530[chr17:53508482]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 53508467 53508485 IRF2 JASPAR yes 54849296
chr17 53508468 53508489 IRF1 JASPAR yes 54849297
chr17 53508470 53508485 PRDM1 JASPAR yes 54849299
chr17 53508471 53508485 STAT1 JASPAR yes 54849300
chr17 53508472 53508484 IRF1 JASPAR yes 54849301
chr17 53508472 53508486 IRF7 JASPAR yes 54849302
chr17 53508472 53508486 IRF8 JASPAR yes 54849303
chr17 53508472 53508487 IRF9 JASPAR yes 54849304
chr17 53508476 53508491 PRDM1 JASPAR yes 54849305
Genes associated with rs139230530[chr17:53508482], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More