EnhancerDB
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  3. rs139472869[chr1:52006643]
Enhancers that have rs139472869[chr1:52006643]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 51998705 52011795 enh359
Prostate (PC-3) Cervix (HeLa-S3) Stomach Muscle (A673) Colon (HCT116) Peripheral Blood (MM.1S) Blood (Karpas-422) Lung (PC-9) Pancreas (Panc1) Muscle (Myotube) Uterus Blood (T-cell) Epithelial (MCF-7)
Transcript factors that have rs139472869[chr1:52006643]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 52006627 52006648 IRF1 JASPAR yes 28847776
chr1 52006630 52006645 FOXP1 JASPAR yes 28847777
chr1 52006631 52006646 STAT2 JASPAR yes 28847778
chr1 52006632 52006647 FOXP1 JASPAR yes 28847779
chr1 52006632 52006653 IRF1 JASPAR yes 28847780
chr1 52006633 52006654 IRF1 JASPAR yes 28847781
chr1 52006634 52006646 FOXC2 JASPAR yes 28847782
chr1 52006635 52006646 FOXP2 JASPAR yes 28847783
chr1 52006637 52006652 FOXP1 JASPAR yes 28847784
chr1 52006638 52006659 IRF1 JASPAR yes 28847785
Genes associated with rs139472869[chr1:52006643], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More