EnhancerDB
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  3. rs139553797[chr17:39834912]
Enhancers that have rs139553797[chr17:39834912]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 39816776 39838995 enh4409
Bone Marrow (K562) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Blood (T-cell) Lung (PC-9) Blood (GM12878) Placenta Colon (HCT116) Uterus Thyroid Blood (Karpas-422) Peripheral Blood (MM.1S) Pancreas Neural Stem Cells (H9) Thymus
Transcript factors that have rs139553797[chr17:39834912]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 39834001 39835444 POLR2A UCSC Txn Factor no Conserved 108259514
chr17 39834441 39835281 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21758240
chr17 39834441 39835281 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108259515
chr17 39834463 39835435 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21758241
chr17 39834463 39835435 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108259516
chr17 39834466 39835199 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21758242
chr17 39834466 39835199 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108259517
chr17 39834497 39835238 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21758243
chr17 39834497 39835238 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108259518
chr17 39834508 39835231 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21758244
chr17 39834508 39835231 PML UCSC Txn Factor no Conserved 108259519
chr17 39834508 39835231 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108259520
chr17 39834530 39835205 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21758245
chr17 39834530 39835205 TAF7 UCSC Txn Factor no Conserved 108259521
chr17 39834530 39835205 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108259522
chr17 39834576 39835188 BCLAF1 UCSC Txn Factor no Conserved 108259523
chr17 39834648 39835757 ZNF143 GTRD no Epithelial (MCF-7) 108259524
chr17 39834653 39835217 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21758246
chr17 39834653 39835217 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108259525
chr17 39834668 39835212 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108259526
chr17 39834694 39835644 ZBTB33 GTRD no Lung (A549) 108259527
chr17 39834702 39835788 ZBTB33 GTRD no Lung (A549) 108259528
chr17 39834718 39835664 ZNF274 GTRD no Cervix (HeLa-S3) 21758247
chr17 39834718 39835664 ZNF274 GTRD no Cervix (HeLa-S3) 108259529
chr17 39834726 39835235 TCF7L2 GTRD no Colon (HCT116) 21758248
chr17 39834726 39835235 TCF7L2 GTRD no Colon (HCT116) 108259530
chr17 39834727 39835651 ZNF274 GTRD no Bone Marrow (K562) 21758249
chr17 39834727 39835651 ZNF274 GTRD no Bone Marrow (K562) 108259531
chr17 39834728 39835201 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108259532
chr17 39834730 39835230 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21758250
chr17 39834730 39835230 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108259533
chr17 39834742 39836471 ZNF274 GTRD no Blood (GM12878) 21758251
chr17 39834742 39836471 ZNF274 GTRD no Blood (GM12878) 108259534
chr17 39834746 39835594 TCF7L2 GTRD no Colon (HCT116) 21758252
chr17 39834746 39835594 TCF7L2 GTRD no Colon (HCT116) 108259535
chr17 39834747 39835682 ZBTB33 GTRD no Lung (A549) 108259536
chr17 39834764 39835872 ZNF143 GTRD no Epithelial (MCF-7) 108259537
chr17 39834765 39835201 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21758253
chr17 39834765 39835201 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108259538
chr17 39834777 39835460 ZNF274 GTRD no Bone Marrow (K562) 21758254
chr17 39834777 39835460 ZNF274 GTRD no Bone Marrow (K562) 108259539
chr17 39834788 39835579 ZNF274 GTRD no Liver (HepG2) 108259540
chr17 39834791 39835471 ZNF274 GTRD no Bone Marrow (K562) 21758255
chr17 39834791 39835471 ZNF274 GTRD no Bone Marrow (K562) 108259541
chr17 39834795 39835231 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21758256
chr17 39834795 39835231 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108259542
chr17 39834800 39835256 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21758257
chr17 39834800 39835256 GTF2F1 UCSC Txn Factor no Conserved 108259543
chr17 39834800 39835256 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108259544
chr17 39834815 39836342 ZNF274 GTRD no Blood (GM12878) 21758258
chr17 39834815 39836342 ZNF274 GTRD no Blood (GM12878) 108259545
chr17 39834827 39835331 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21758259
chr17 39834827 39835331 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108259546
chr17 39834833 39835642 ZNF274 GTRD no Bone Marrow (K562) 21758260
chr17 39834833 39835642 ZNF274 GTRD no Bone Marrow (K562) 108259547
chr17 39834839 39835535 ZNF274 GTRD no Bone Marrow (K562) 21758261
chr17 39834839 39835535 ZNF274 GTRD no Bone Marrow (K562) 108259548
chr17 39834848 39835549 ZNF274 GTRD no Bone Marrow (K562) 21758262
chr17 39834848 39835549 ZNF274 GTRD no Bone Marrow (K562) 108259549
chr17 39834858 39835234 TBP UCSC Txn Factor no Conserved 108259550
chr17 39834858 39835234 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108259551
chr17 39834864 39835224 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108259552
chr17 39834872 39835192 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21758263
chr17 39834872 39835192 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108259553
chr17 39834883 39835549 ZBTB33 GTRD no Lung (A549) 108259554
chr17 39834900 39834912 HNF1B JASPAR yes 54272488
chr17 39834900 39835603 ZNF274 GTRD no Liver (HepG2) 108259555
chr17 39834905 39834920 SCRT1 JASPAR yes 54272489
chr17 39834908 39834920 PKNOX1 JASPAR yes 54272491
chr17 39834908 39834920 PKNOX2 JASPAR yes 54272492
chr17 39834908 39834920 TGIF1 JASPAR yes 54272493
chr17 39834908 39834920 TGIF2 JASPAR yes 54272494
chr17 39834909 39834919 CLOCK JASPAR yes 54272495
chr17 39834909 39834919 MYF6 JASPAR yes 54272496
Genes associated with rs139553797[chr17:39834912], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More