EnhancerDB
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  3. rs139900459[chr1:227953767]
Enhancers that have rs139900459[chr1:227953767]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 227936025 227954000 enh47302
Bone Marrow (K562) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Lung (PC-9) Breast Muscle (Myoblast) Spleen Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs139900459[chr1:227953767]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 227952275 227954257 TCF7L2 GTRD no Colon (HCT116) 107876646
chr1 227953192 227954287 TCF7L2 GTRD no Colon (HCT116) 107876647
chr1 227953264 227954223 TCF7L2 GTRD no Colon (HCT116) 107876648
chr1 227953279 227954172 ZNF274 GTRD no Cervix (HeLa-S3) 21388167
chr1 227953279 227954172 ZNF274 GTRD no Cervix (HeLa-S3) 107876649
chr1 227953344 227954505 ZNF274 GTRD no Bone Marrow (K562) 21388168
chr1 227953344 227954505 ZNF274 GTRD no Bone Marrow (K562) 107876650
chr1 227953383 227954390 ZNF274 GTRD no Bone Marrow (K562) 21388169
chr1 227953383 227954390 ZNF274 GTRD no Bone Marrow (K562) 107876651
chr1 227953416 227954771 ZNF274 GTRD no Bone Marrow (K562) 21388170
chr1 227953416 227954771 ZNF274 GTRD no Bone Marrow (K562) 107876652
chr1 227953420 227954151 ZNF274 GTRD no Bone Marrow (K562) 21388171
chr1 227953420 227954151 ZNF274 GTRD no Bone Marrow (K562) 107876653
chr1 227953439 227954304 ZNF274 GTRD no Bone Marrow (K562) 21388172
chr1 227953439 227954304 ZNF274 GTRD no Bone Marrow (K562) 107876654
chr1 227953475 227954193 ZBTB33 GTRD no Lung (A549) 107876655
chr1 227953482 227954617 ZNF143 GTRD no Epithelial (MCF-7) 21388173
chr1 227953482 227954617 ZNF143 GTRD no Epithelial (MCF-7) 107876656
chr1 227953495 227954462 ZNF143 GTRD no Epithelial (MCF-7) 21388174
chr1 227953495 227954462 ZNF143 GTRD no Epithelial (MCF-7) 107876657
chr1 227953507 227954361 ZNF274 GTRD no Bone Marrow (K562) 21388175
chr1 227953507 227954361 ZNF274 GTRD no Bone Marrow (K562) 107876658
chr1 227953571 227954283 ZNF143 GTRD no Epithelial (MCF-7) 21388176
chr1 227953571 227954283 ZNF143 GTRD no Epithelial (MCF-7) 107876659
chr1 227953646 227954825 ZBTB33 GTRD no Lung (A549) 107876660
chr1 227953657 227954146 ZNF274 GTRD no Bone Marrow (K562) 21388177
chr1 227953657 227954146 ZNF274 GTRD no Bone Marrow (K562) 107876661
chr1 227953680 227954046 TCF7L2 GTRD no Colon (HCT116) 107876662
chr1 227953683 227954327 ZNF274 GTRD no Liver (HepG2) 107876663
chr1 227953683 227954703 ZBTB33 GTRD no Lung (A549) 107876664
chr1 227953692 227954500 ZBTB33 GTRD no Lung (A549) 107876665
chr1 227953692 227954542 ZNF274 GTRD no Bone Marrow (K562) 21388178
chr1 227953692 227954542 ZNF274 GTRD no Bone Marrow (K562) 107876666
chr1 227953702 227954318 ZNF274 GTRD no Bone Marrow (K562) 21388179
chr1 227953702 227954318 ZNF274 GTRD no Bone Marrow (K562) 107876667
chr1 227953702 227954628 ZNF274 GTRD no Cervix (HeLa-S3) 21388180
chr1 227953702 227954628 ZNF274 GTRD no Cervix (HeLa-S3) 107876668
chr1 227953716 227954490 ZNF274 GTRD no Blood (GM12878) 107876669
chr1 227953720 227954340 ZNF143 GTRD no Epithelial (MCF-7) 21388181
chr1 227953720 227954340 ZNF143 GTRD no Epithelial (MCF-7) 107876670
chr1 227953720 227954555 ZNF143 GTRD no Epithelial (MCF-7) 21388182
chr1 227953720 227954555 ZNF143 GTRD no Epithelial (MCF-7) 107876671
chr1 227953723 227954458 ZNF274 GTRD no Blood (GM12878) 107876672
chr1 227953732 227954496 ZNF274 GTRD no Blood (GM12878) 107876673
chr1 227953740 227954415 ZNF274 GTRD no Bone Marrow (K562) 21388183
chr1 227953740 227954415 ZNF274 GTRD no Bone Marrow (K562) 107876674
chr1 227953752 227954425 ZNF143 GTRD no Epithelial (MCF-7) 21388184
chr1 227953752 227954425 ZNF143 GTRD no Epithelial (MCF-7) 107876675
chr1 227953755 227953767 JDP2 JASPAR yes 35886745
chr1 227953756 227954487 ZNF274 GTRD no Bone Marrow (K562) 21388185
chr1 227953756 227954487 ZNF274 GTRD no Bone Marrow (K562) 107876676
chr1 227953760 227954612 ZNF274 GTRD no Bone Marrow (K562) 21388186
chr1 227953760 227954612 ZNF274 GTRD no Bone Marrow (K562) 107876677
chr1 227953761 227954395 ZNF143 GTRD no Epithelial (MCF-7) 21388187
chr1 227953761 227954395 ZNF143 GTRD no Epithelial (MCF-7) 107876678
chr1 227953767 227954337 ZNF143 GTRD no Epithelial (MCF-7) 21388188
chr1 227953767 227954337 ZNF143 GTRD no Epithelial (MCF-7) 107876679
Genes associated with rs139900459[chr1:227953767], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More