EnhancerDB
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  3. rs140259140[chr16:28103658]
Enhancers that have rs140259140[chr16:28103658]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 28098765 28106942 enh16617
Skin (Keratinocyte) Brain (SK-N-SH) Prostate (RWPE1) Esophagus Astrocyte Placenta Colon (HCT116) Thyroid Lung (PC-9) Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs140259140[chr16:28103658]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 28102930 28103830 P63 GTRD no Skin (Keratinocyte) 21701333
chr16 28102930 28103830 P63 GTRD no Skin (Keratinocyte) 108190859
chr16 28102931 28103830 P63 GTRD no Skin (Keratinocyte) 21701334
chr16 28102931 28103830 P63 GTRD no Skin (Keratinocyte) 108190860
chr16 28102938 28103757 P63 GTRD no Skin (Keratinocyte) 21701335
chr16 28103020 28103862 P63 GTRD no Skin (Keratinocyte) 21701336
chr16 28103020 28103862 P63 GTRD no Skin (Keratinocyte) 108190861
chr16 28103457 28103954 TCF7L2 GTRD no Colon (HCT116) 21701337
chr16 28103457 28103954 TCF7L2 GTRD no Colon (HCT116) 108190862
chr16 28103547 28104276 ZNF274 GTRD no Blood (GM12878) 108190863
chr16 28103552 28104309 ZNF143 GTRD no Epithelial (MCF-7) 21701338
chr16 28103552 28104309 ZNF143 GTRD no Epithelial (MCF-7) 108190864
chr16 28103594 28104260 TCF7L2 GTRD no Colon (HCT116) 21701339
chr16 28103594 28104260 TCF7L2 GTRD no Colon (HCT116) 108190865
chr16 28103656 28103669 SMAD2 JASPAR yes 10217152
chr16 28103657 28103670 EOMES JASPAR yes 10217153
Genes associated with rs140259140[chr16:28103658], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More