EnhancerDB
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  3. rs140483779[chr17:53514464]
Enhancers that have rs140483779[chr17:53514464]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 53505736 53535115 enh4475
Brain (SK-N-MC) Liver Colon (HCT116) Blood (Karpas-422) Pancreas Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs140483779[chr17:53514464]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 53514451 53514469 IRF2 JASPAR yes 54850471
chr17 53514461 53514471 EMX1 JASPAR yes 54850472
chr17 53514461 53514471 EMX2 JASPAR yes 54850473
chr17 53514461 53514471 GBX2 JASPAR yes 54850474
chr17 53514461 53514471 HOXB2 JASPAR yes 54850475
chr17 53514461 53514471 HOXB3 JASPAR yes 54850476
chr17 53514461 53514471 LHX6 JASPAR yes 54850477
chr17 53514461 53514471 MEOX1 JASPAR yes 54850478
chr17 53514461 53514471 MEOX2 JASPAR yes 54850479
chr17 53514461 53514471 MNX1 JASPAR yes 54850480
chr17 53514461 53514471 POU6F1 JASPAR yes 54850481
chr17 53514461 53514472 HOXA10 JASPAR yes 54850482
chr17 53514462 53514470 LMX1A JASPAR yes 54850483
chr17 53514462 53514470 LMX1B JASPAR yes 54850484
chr17 53514462 53514470 NKX6-1 JASPAR yes 54850485
chr17 53514462 53514470 NKX6-2 JASPAR yes 54850486
chr17 53514462 53514470 PDX1 JASPAR yes 54850487
chr17 53514462 53514470 VAX1 JASPAR yes 54850488
chr17 53514462 53514470 VAX2 JASPAR yes 54850489
chr17 53514462 53514470 VSX1 JASPAR yes 54850490
Genes associated with rs140483779[chr17:53514464], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More