EnhancerDB
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  3. rs140560299[chr19:3377054]
Enhancers that have rs140560299[chr19:3377054]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 3362205 3392371 enh17862
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Cervix (HeLa-S3) Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs140560299[chr19:3377054]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 3377038 3377059 IRF1 JASPAR yes 112125250
chr19 3377042 3377057 PRDM1 JASPAR yes 112125252
chr19 3377042 3377057 STAT2 JASPAR yes 112125253
chr19 3377051 3377062 CDX2 JASPAR yes 112125254
chr19 3377052 3377062 MNX1 JASPAR yes 112125255
chr19 3377052 3377063 HOXA10 JASPAR yes 112125256
chr19 3377053 3377062 CDX1 JASPAR yes 112125257
chr19 3377053 3377063 HOXA13 JASPAR yes 112125258
chr19 3377053 3377063 HOXB13 JASPAR yes 112125259
chr19 3377053 3377063 HOXC10 JASPAR yes 112125260
chr19 3377053 3377063 HOXD13 JASPAR yes 112125261
Genes associated with rs140560299[chr19:3377054], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More