EnhancerDB
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  3. rs140624272[chr12:49592771]
Enhancers that have rs140624272[chr12:49592771]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 49590445 49597955 enh2325
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Blood (T-cell) Lung (PC-9) Bone (Osteoblast) Muscle (A673) Blood (Karpas-422) Muscle (Myoblast) Breast Spleen Uterus Thymus Heart
chr12 49592771 49592915 vista13328
VISTA
Transcript factors that have rs140624272[chr12:49592771]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 49592436 49592807 TCF7L2 GTRD no Colon (HCT116) 108029807
chr12 49592531 49592975 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 108029808
chr12 49592613 49592969 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 108029809
chr12 49592646 49592956 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 108029810
chr12 49592684 49593008 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108029811
chr12 49592768 49592778 GATA1 TRANSFAC yes 82399999
chr12 49592768 49592778 GATA1 TRANSFAC yes 120763278
chr12 49592769 49592783 POU1F1 JASPAR yes 82400000
chr12 49592769 49592783 POU1F1 JASPAR yes 120763279
Genes associated with rs140624272[chr12:49592771], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More