EnhancerDB
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  3. rs142004253[chr16:28204583]
Enhancers that have rs142004253[chr16:28204583]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 28190945 28218035 enh3961
Skin (Keratinocyte) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Blood (T-cell) Esophagus Astrocyte Blood (OCI-LY7) Blood (GM12878) Stomach Muscle (A673) Placenta Colon (HCT116) Peripheral Blood (MM.1S) Blood (Karpas-422) Lung (PC-9) Muscle (Myoblast) Thymus Epithelial (MCF-7)
chr16 28204572 28204722 vista22303
VISTA
Transcript factors that have rs142004253[chr16:28204583]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 28203738 28204874 ZNF274 GTRD no Bone Marrow (K562) 108190904
chr16 28204292 28204976 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21701352
chr16 28204292 28204976 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108190905
chr16 28204336 28204855 ZNF143 GTRD no Epithelial (MCF-7) 21701353
chr16 28204336 28204855 ZNF143 GTRD no Epithelial (MCF-7) 108190906
chr16 28204362 28204860 ZNF143 GTRD no Epithelial (MCF-7) 21701354
chr16 28204362 28204860 ZNF143 GTRD no Epithelial (MCF-7) 108190907
chr16 28204384 28204980 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21701355
chr16 28204384 28204980 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108190908
chr16 28204387 28205047 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21701356
chr16 28204387 28205047 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108190909
chr16 28204412 28204848 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21701357
chr16 28204412 28204848 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108190910
chr16 28204433 28204953 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21701358
chr16 28204433 28204953 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108190911
chr16 28204440 28204960 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21701359
chr16 28204440 28204960 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108190912
chr16 28204447 28204751 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21701360
chr16 28204447 28204751 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108190913
chr16 28204450 28204814 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21701361
chr16 28204450 28204814 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108190914
chr16 28204456 28205129 SOX2 GTRD no Neural Stem Cells (H9) 108190915
chr16 28204458 28204868 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21701362
chr16 28204458 28204868 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108190916
chr16 28204461 28204771 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108190917
chr16 28204462 28204782 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21701363
chr16 28204462 28204782 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108190918
chr16 28204470 28204730 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21701364
chr16 28204470 28204730 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108190919
chr16 28204472 28204836 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21701365
chr16 28204472 28204836 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108190920
chr16 28204475 28204841 CTCF UCSC Txn Factor no Conserved 108190921
chr16 28204475 28205535 POLR2A UCSC Txn Factor no Conserved 108190922
chr16 28204481 28204841 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21701366
chr16 28204481 28204841 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108190923
chr16 28204491 28204871 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21701367
chr16 28204491 28204871 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108190924
chr16 28204497 28204741 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108190925
chr16 28204499 28204795 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21701368
chr16 28204499 28204795 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108190926
chr16 28204514 28205057 SOX2 GTRD no Neural Stem Cells (H9) 108190927
chr16 28204547 28204770 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21701369
chr16 28204547 28204770 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108190928
chr16 28204547 28204773 SPI1 UCSC Txn Factor no Conserved 108190929
chr16 28204552 28204681 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21701370
chr16 28204552 28204681 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108190930
chr16 28204554 28204758 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108190931
chr16 28204558 28204803 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21701371
chr16 28204558 28204803 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108190932
chr16 28204558 28204807 PAX5 UCSC Txn Factor no Conserved 108190933
chr16 28204561 28204807 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21701372
chr16 28204561 28204807 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108190934
chr16 28204562 28204902 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21701373
chr16 28204562 28204902 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108190935
chr16 28204571 28204590 RFX2 JASPAR yes 10221371
chr16 28204571 28204590 RFX2 JASPAR yes 49362596
chr16 28204573 28204588 RFX5 JASPAR yes 10221372
chr16 28204573 28204588 RFX5 JASPAR yes 49362597
chr16 28204575 28204876 SOX2 GTRD no Neural Stem Cells (H9) 108190936
Genes associated with rs142004253[chr16:28204583], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More