EnhancerDB
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  3. rs142316852[chr17:53510998]
Enhancers that have rs142316852[chr17:53510998]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 53505736 53535115 enh4475
Brain (SK-N-MC) Liver Colon (HCT116) Blood (Karpas-422) Pancreas Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs142316852[chr17:53510998]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 53510359 53511034 TCF12 UCSC Txn Factor no Conserved 108273030
chr17 53510359 53511034 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108273031
chr17 53510420 53511016 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 21772546
chr17 53510420 53511016 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 108273041
chr17 53510420 53511228 TCF7L2 UCSC Txn Factor no Conserved 108273042
chr17 53510438 53511089 GATA3 UCSC Txn Factor no Conserved 108273043
chr17 53510495 53511577 POLR2A UCSC Txn Factor no Conserved 108273048
chr17 53510589 53511139 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21772566
chr17 53510589 53511139 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108273074
chr17 53510619 53511089 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21772569
chr17 53510619 53511089 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108273078
chr17 53510632 53511228 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 21772570
chr17 53510632 53511228 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 108273079
chr17 53510998 53511314 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21772574
Genes associated with rs142316852[chr17:53510998], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More