EnhancerDB
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Enhancers that have rs142415866[chr1:54052154]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 54045925 54059092 enh26707
Brain (SK-N-SH) Brain (SK-N-MC) Blood (T-cell) Astrocyte Peripheral Blood (MM.1S) Pancreas Muscle (Myotube) Uterus Thymus Stomach
Transcript factors that have rs142415866[chr1:54052154]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 54051058 54055279 ZNF274 GTRD no Bone Marrow (K562) 107804010
chr1 54051288 54055240 ZNF274 GTRD no Bone Marrow (K562) 107804011
chr1 54051504 54055886 ZNF274 GTRD no Bone Marrow (K562) 107804012
chr1 54051524 54054710 ZNF274 GTRD no Blood (GM12878) 107804013
chr1 54051609 54054952 ZNF274 GTRD no Liver (HepG2) 107804014
chr1 54051654 54054972 ZNF274 GTRD no Bone Marrow (K562) 107804015
chr1 54051686 54055847 ZNF274 GTRD no Bone Marrow (K562) 107804016
chr1 54051691 54053868 ZNF143 GTRD no Epithelial (MCF-7) 107804017
chr1 54051701 54055017 ZNF274 GTRD no Blood (GM12878) 107804018
chr1 54051717 54052971 ZNF274 GTRD no Liver (HepG2) 107804019
chr1 54051728 54054125 ZNF143 GTRD no Epithelial (MCF-7) 107804020
chr1 54051731 54054074 ZNF143 GTRD no Epithelial (MCF-7) 107804021
chr1 54051743 54053993 ZNF274 GTRD no Bone Marrow (K562) 107804022
chr1 54051767 54054138 ZNF274 GTRD no Liver (HepG2) 107804023
chr1 54051769 54054829 ZNF274 GTRD no Cervix (HeLa-S3) 107804024
chr1 54051770 54054117 ZNF274 GTRD no Cervix (HeLa-S3) 107804025
chr1 54051790 54052929 ZNF274 GTRD no Liver (HepG2) 107804026
chr1 54051794 54054885 ZNF274 GTRD no Blood (GM12878) 107804027
chr1 54051813 54054906 ZNF274 GTRD no Blood (GM12878) 107804028
chr1 54051818 54054947 ZNF274 GTRD no Bone Marrow (K562) 107804029
chr1 54051819 54053588 ZNF274 GTRD no Liver (HepG2) 107804030
chr1 54051842 54054813 ZNF274 GTRD no Liver (HepG2) 107804031
chr1 54051858 54054314 ZBTB33 GTRD no Lung (A549) 107804032
chr1 54051867 54054743 ZNF274 GTRD no Bone Marrow (K562) 107804033
chr1 54051872 54054070 ZNF274 GTRD no Blood (GM12878) 107804034
chr1 54051873 54054699 ZNF274 GTRD no Bone Marrow (K562) 107804035
chr1 54051877 54054827 ZNF143 GTRD no Epithelial (MCF-7) 107804036
chr1 54051884 54054752 ZNF274 GTRD no Bone Marrow (K562) 107804037
chr1 54051886 54054822 ZNF274 GTRD no Bone Marrow (K562) 107804038
chr1 54051900 54054836 ZNF274 GTRD no Bone Marrow (K562) 107804039
chr1 54051901 54055117 ZNF274 GTRD no Bone Marrow (K562) 107804040
chr1 54051906 54053936 ZNF274 GTRD no Cervix (HeLa-S3) 107804041
chr1 54051923 54054232 ZNF274 GTRD no Liver (HepG2) 107804042
chr1 54051930 54054973 ZNF274 GTRD no Bone Marrow (K562) 107804043
chr1 54051946 54054856 ZNF274 GTRD no Bone Marrow (K562) 107804044
chr1 54051977 54054190 ZNF274 GTRD no Cervix (HeLa-S3) 107804045
chr1 54051977 54054869 ZNF274 GTRD no Bone Marrow (K562) 107804046
chr1 54051981 54054199 ZNF274 GTRD no Bone Marrow (K562) 107804047
chr1 54052012 54053998 ZBTB33 GTRD no Brain (SK-N-SH) 107804048
chr1 54052024 54054978 STAT3 GTRD no Blood (OCI-LY7) 107804049
chr1 54052030 54054031 ZNF274 GTRD no Blood (GM12878) 107804050
chr1 54052049 54053977 ZNF274 GTRD no Liver (HepG2) 107804051
chr1 54052068 54054058 ZNF274 GTRD no Bone Marrow (K562) 107804052
chr1 54052073 54054649 ZNF274 GTRD no Blood (GM12878) 107804053
chr1 54052073 54054680 ZNF143 GTRD no Epithelial (MCF-7) 107804054
chr1 54052075 54054192 ZNF274 GTRD no Bone Marrow (K562) 107804055
chr1 54052108 54053853 ZNF274 GTRD no Cervix (HeLa-S3) 107804056
chr1 54052117 54054252 ZNF274 GTRD no Blood (GM12878) 107804057
chr1 54052151 54052155 YY1 TRANSFAC yes 28940165
chr1 54052151 54054234 ZBTB33 GTRD no Brain (SK-N-SH) 107804058
chr1 54052154 54052172 IRF2 JASPAR yes 28940166
Genes associated with rs142415866[chr1:54052154], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More