EnhancerDB
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  3. rs142474142[chr19:4972100]
Enhancers that have rs142474142[chr19:4972100]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 4966316 4995955 enh4974
Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Thyroid Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs142474142[chr19:4972100]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 4969752 4972866 ZNF274 GTRD no Blood (GM12878) 108373950
chr19 4970334 4972312 ZNF143 GTRD no Epithelial (MCF-7) 21842847
chr19 4970334 4972312 ZNF143 GTRD no Epithelial (MCF-7) 108373958
chr19 4970364 4972264 ZNF143 GTRD no Epithelial (MCF-7) 21842851
chr19 4970364 4972264 ZNF143 GTRD no Epithelial (MCF-7) 108373963
chr19 4970404 4972235 ZNF143 GTRD no Epithelial (MCF-7) 21842853
chr19 4970404 4972235 ZNF143 GTRD no Epithelial (MCF-7) 108373965
chr19 4970418 4972275 ZNF143 GTRD no Epithelial (MCF-7) 21842854
chr19 4970418 4972275 ZNF143 GTRD no Epithelial (MCF-7) 108373966
chr19 4970708 4972254 ZNF274 GTRD no Bone Marrow (K562) 108373999
chr19 4971025 4973751 TCF7L2 GTRD no Colon (HCT116) 21842892
chr19 4971025 4973751 TCF7L2 GTRD no Colon (HCT116) 108374026
chr19 4972098 4972119 ZNF263 JASPAR yes 112200556
chr19 4972099 4972109 SP1 JASPAR yes 112200557
Genes associated with rs142474142[chr19:4972100], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More