EnhancerDB
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  3. rs142619960[chr1:41828943]
Enhancers that have rs142619960[chr1:41828943]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 41825825 41840275 enh11786
Cervix (HeLa-S3) Brain (SK-N-SH) Ovary Prostate (RWPE1) Placenta Colon (HCT116) Uterus Epithelial (MCF-7)
chr1 41828934 41829164 vista1321
VISTA
Transcript factors that have rs142619960[chr1:41828943]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 41828908 41829286 TCF7L2 GTRD no Colon (HCT116) 107802948
chr1 41828936 41828948 TFAP2A JASPAR yes 28380909
chr1 41828936 41828948 TFAP2B JASPAR yes 28380910
chr1 41828936 41828948 TFAP2C JASPAR yes 28380911
chr1 41828936 41828948 TFAP2A JASPAR yes 118278305
chr1 41828936 41828948 TFAP2B JASPAR yes 118278306
chr1 41828936 41828948 TFAP2C JASPAR yes 118278307
chr1 41828936 41828949 TFAP2A JASPAR yes 28380912
chr1 41828936 41828949 TFAP2B JASPAR yes 28380913
chr1 41828936 41828949 TFAP2C JASPAR yes 28380914
chr1 41828936 41828949 TFAP2A JASPAR yes 118278308
chr1 41828936 41828949 TFAP2B JASPAR yes 118278309
chr1 41828936 41828949 TFAP2C JASPAR yes 118278310
chr1 41828943 41828964 ZNF263 JASPAR yes 28380915
chr1 41828943 41828964 ZNF263 JASPAR yes 118278311
Genes associated with rs142619960[chr1:41828943], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More